Log of molecular dynamics


--- 2016

Sep 28 - energy overflow - now omitting velocity scaling if user clicks fast,
         restarted from Sep 27 coordinates

Aug 25 - energy overflow - added another distance restraint
         and restarted from Aug 4 coordinates

Jul  6 - energy overflow - added distance
         restraint to keep end bases apart 
         and restarted from Jul 3 coordinates

May 23 - energy overflow - adjusted parameters,
         added per-atom acceleration limit,
         and restarted from May 22 coordinates

May 14 - energy overflow from user activity - adjusted parameters
         and restarted from May 12 coordinates

May 12 - added 'taps' from slide show clicks

May 3 - energy minimization, dynamics started